Publications

Peer-reviewed research from our team

2025

Efficacy and safety evaluation of artificial intelligence-identified antimicrobial peptides for use against avian pathogenic Escherichia coli in the poultry industry

Demirsoy E, Parkin TI, Mihalynuk SE, Dema AH, Corrie L, Heilker ME, Kuecks-Winger HN, Yanai A, Birol UB, McIlwee M, de Wet K, Knipscheer M, Bowes V, Tuytel V, Ritchie L, Köster W, Berberov E, Cox WR, Kotkoff M, Thompson VC, Warren RL, Fraser E, Hoang LMN, Hof F, Birol F, Helbing CC, and Birol I

bioRxiv

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Antimicrobial Peptides with High Bioactivity Against MDR Isolates: Addressing Public Health Concerns

Salehi A, Yanai A, Richter A, Li C, Sutherland D, Coombe L, Kotkoff M, Warren RL, Hoang LMN, and Birol I

Microbial Pathogenesis 107:1-8

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Mining the UniProtKB/Swiss-Prot database for antimicrobial peptides

Li C, Sutherland D, Salehi A, Richter A, Lin D, Aninta SI, Ebrahimikondori H, Yanai A, Coombe L, Warren RL, Kotkoff M, Hoang LMN, Helbing CC, and Birol I

Protein Science 34:1-16

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2024

De novo synthetic antimicrobial peptide design with a recurrent neural network

Li C, Sutherland D, Richter A, Coombe L, Yanai A, Warren RL, Kotkoff M, Hof F, Hoang LMN, Helbing CC, and Birol I

Protein Science 33(8):1-16

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Structure-aware deep learning model for peptide toxicity prediction

Ebrahimikondori H, Sutherland D, Yanai A, Richter A, Salehi A, Li C, Coombe L, Kotkoff M, Warren RL, and Birol I

Protein Science 33(7):1-15

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2022

Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects

Richter A, Sutherland D, Ebrahimikondori H, Babcock A, Louie N, Li C, Coombe L, Lin D, Warren RL, Yanai A, Kotkoff M, Helbing CC, Hof F, Hoang LMN, and Birol I

Antibiotics 11(12):1710

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Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage

Lin D, Sutherland D, Aninta SI, Louie N, Nip KM, Li C, Yanai A, Coombe L, Warren RL, Helbing CC, Hoang LMN, and Birol I

Antibiotics 11(7):952

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AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens

Li C, Sutherland D, Hammond SA, Yang C, Taho F, Bergman L, Houston S, Warren RL, Wong T, Hoang LMN, Cameron CE, Helbing CC, and Birol I

BMC Genomics 23(1):77

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2019

Antimicrobial peptides from Rana [Lithobates] catesbeiana: Gene structure and bioinformatic identification of novel forms from tadpoles

Helbing CC, Hammond SA, Jackman SH, Houston S, Warren RL, Cameron CE, and Birol I

Scientific Reports 9(1):1529

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More Research

View the complete publication history of our Chief Scientific Officer.

Dr. Inanç Birol on Google Scholar